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Uniprot taxonomy

Name: Uniprot taxonomy

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The UniProt taxonomy database stores the taxonomy tree structure, thus making it possible to navigate from one node to another and to access the lineage for each node. For convenience reasons, both GenBank/EMBL-Bank/DDBJ and UniProtKB entries store an abbreviated lineage, which contains only the familiar taxon names.

This subsection of the Names and taxonomy section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as. The XML format represents it as a cross-reference (the dbReference child element of the organism element), and the RDF format stores it in the organism property of the uniprot entry.

This is the only taxonomy information that is stored in the RDF format of a UniProtKB entry. Supporting data. Literature citations · Taxonomy · Keywords · Subcellular locations · Cross-referenced databases · Diseases. The taxonomy classification is maintained at the NCBI and is used by the nucleotide sequence databases (EMBL/GenBank/DDBJ). The NCBI taxonomy classification is built mainly from sequence data information, but it also relies on published authorities whenever possible.

The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein Taxonomy. h. The UniProt Knowledgebase (UniProtKB) provides the central database of protein The taxonomic data (description of the biological source of the protein). In reply to your last question: The taxonomy database that is maintained by the UniProt group ( is based on.

UniProtKB column names for programmatic access are documented here: http:// You can also. This a very good set of questions, and as lead developer for the hosratopo.spacet. org endpoint I will try to answer them all. However, in the future.


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